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Agenda

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Day Time Activity (Instructor) Content Expected Outcomes
Monday (2/17/2020) Room: HSIB 642 08:30-09:00 Instructor pre-briefing (all instructors)    
  09:00-09:10 Welcome & Introductions (Swetnam) Overview of Code of Conduct, Course Materials, and logistics  
  09:10-09:40 Discussion: What is Open Science? (Merchant) Overview of CyVerse mission  
  09:40-10:00 Group Activity Introduce someone Meet one another, draw a picture of their science
  10:00-10:20 Break    
  10:20-11:00 Data Management Overview (Walls) Organization, Sharing, Metadata Understand why you need data management
  11:00-12:00 Intro to CyVerse I: Data Management (Tuteja) Data Store Access: iCommands, WebDav, CyberDuck Learn to communicate with the Data Store
  12:00-13:00 Lunch Optional: Command Line Refresher Basic navigation and file manipulation
  13:00-14:00 Intro to Cyverse II: Discovery Environment (Cooksey) Launching Apps in DE Walkthrough and terminology Launch executable and interactive apps. Add a tool and app
  14:00-14:20 Key Concepts: Linux (Swetnam) GitPitch link Why Linux, Version Control, Containers Understanding what open source sofware means to open science
  14:20-14:40 Key Concepts: Communication & Documentation (Swetnam) Using tools like Slack, Medium, Twitter Project management tools, and public relations with social media.
  14:40-15:00 Break    
  15:00-17:00 Collaboration Culture and Roles I (Mandel, Eller College of Management)   Learn about yourself, and others
  17:00-17:30 Instructor Debrief    

Day Time Activity (Instructor) Content Expected Outcomes
Tuesday (2/18/2020) Room: HSIB 531 08:30-09:00 Instructor pre-briefing    
  09:00-9:20 FOSS alumna story (Graf) “What I got from FOSS” Think about what you will take home from FOSS
  09:20-10:00 FAIR Data Principles (Walls) Metadata, standards, licensing, legal, and ethics Be able to find standards for your data, choose a license
  10:00-10:20 Break    
  10:20-11:00 Data Management Plans (Walls) Writing a Data Management Plan Learn how to write an excellent DMP!
  11:00-12:00 Data Management Tools (Walls) Open Science Framework, Protocols.io, CyVerse DataCommons Be able to work with data management tools
  12:00-13:00 Lunch Optional: Conversation with former NSF program officer (Lyons) Learn tips and tricks for writing your next research proposal
  13:00-14:00 The Research Object I: Introduction to GitHub (Balk)   a basic understanding of git
  14:00-15:00 Key Concepts: Documentation & Cyberinfrastructure (Swetnam) Creating documentation, available resources create manuals, tutorials, wikis, and find computer time
  15:00-15:20 Break    
  15:00-17:00 The Research Object I: Introduction to Containers (Cooksey) Intro to BioContainers, Docker, Singularity, and Kubernetes Search for, locate, and launch a container anywhere
  17:00-17:30 Instructor Debrief    

Day Time Activity (Instructor) Content Expected Outcomes
Wednesday (2/19/2020) Room: HSIB 642 08:30-09:00 Instructor pre-briefing    
  09:00-10:00 Introduction to Cloud and HPC (Swetnam) OpenScienceGrid, XSEDE, HPC, Commercial Services  
  10:00-10:20 Break    
  10:20-11:00 Reproducible Research I : Launching VMs (Williams) Launch a virtual machine in Atmosphere and provision it  
  11:00-12:00 Reproducible Research II: Provisioning, GitHub and Licensing (Williams)    
  12:00-13:00 Lunch    
  13:00-15:00 Reproducible Research III: Containers and workflows    
  15:00-15:20 Break    
  15:00-16:00 Reproducible Research IV: Computational Notebooks in CyVerse (Tuteja) Connecting your work in CyVerse VICE Learn to create a VICE app
  16:00-17:00 Project Pitches 5 minute presentation on what your FOSS project will be  
  17:00-17:30 Instructor Debrief    
  18:30 - 20:00 Optional: UA Main Library CATalyst Studios Maker Space, VR, 3D printing, lasercuts, greenscreen photography, and more!  

Day Time Activity (Instructor) Content Expected Outcomes
Thursday (2/19/2020) Room: HSIB 640 08:30-09:00 Instructor pre-briefing    
  09:00-09:20 FOSS alumna story (Quinn) “What I got from FOSS”  
  09:20-10:00 Reproducible Research V: Build your own Containers (Williams, Swetnam) Basics of Docker, creating your own containers  
  10:00-10:20 Break    
  10:20-12:00 Continuous Integration (Williams, Swetnam)    
  12:00-13:00 Lunch    
  12:00-17:00 Project Development Breakout Session to work on your project Examples: Design and launch your own website, Container
  17:00-17:30 Instructor Debrief    

Day Time Activity (Instructor) Content Expected Outcomes
Friday (2/21/2020) Room: HSIB 640 08:30-09:00 Instructor pre-briefing    
  09:00-11:00 Project Development cont. Breakout Session to work on your own project  
  11:00-12:00 Presentations    
  12:00-13:00 Lunch    
  13:00-14:40 Presentations    
  14:40-15:00 Break    
  15:00-16:00 Collaboration Culture and Roles II (Mandel, Eller College of Management)    
  16:00-16:30 Closing Remarks    
  16:30-17:00 Course Evaluations    
  17:00-17:30 Instructor Debrief    


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